Monday, August 27, 2012
Friday, August 24, 2012
zlyoga's Experience with 23andMe: The Videos
My wife discovered a very interesting video on YouTube on genetic testing through 23andMe. Actually, it is a series of two videos. Don't let the youthful demeanor of zlyoga fool you. She knows what she is talking about. The first was done when she submitted her spit sample for testing. The second was done about a year later:
These videos are a good overview of the genetic testing being done at 23andMe. You probably should watch her earlier (2009) video first. This second video (2010) is a little dated in terms of 23andMe's policies but the explanation of the DNA testing and interpreting process is very comprehensive and is still very good.
Of the major US companies that provide direct to consumer (DTC) testing of DNA for genealogical purposes, 23andMe is the only one which also markets testing of genes that have health implications. Many of you will remember that the original impetus for starting 23andMe was largely to help find a cure for Parkinson's. Although most of our genome probably contains health related information, so far we do not know the purpose of much of it. Fortunately our knowledge increases on an almost daily basis.
The other major DTC genetic genealogy testing services---Family Tree DNA and Ancestry---chose to avoid health implications and concentrate of family tree building. They have done this in an attempt to avoid the scrutiny of the FDA and the wrath of the medical community. The FDA has made tentative attempts to claim that DTC genetic testing is a medical device over which they can claim jurisdiction. Large portions of the medical community still believe that DTC genetic testing is something to which they should control access in order to protect the public. Both attitudes, if accepted, would slow the progress toward personalized, genome based, medical treatment that is on the horizon and has the potential to revolutionize medical practice. If can help us predict which drugs and other treatments are likely to be successful with specific patients and thus eliminate many that would be ineffective and even counterproductive. Both patient care outcomes and medical costs can be positively effected if we treat our bodies in ways that our individual genes are ready to accept.
Thursday, August 23, 2012
72 Hour DNA Sale @ FTDNA
Family Tree DNA has just announced a three day sale aimed at individuals who have not yet tested. If you are interested in exploring cousins in any line of your pedigree chart, this would be a great opportunity to start. These test bundles both include the Family Finder autosomal test which is good at finding close cousins on any of your lines. It will return matches with some of your more distant cousins who have tested but not all of them. Your match rate becomes significantly and increasingly smaller with each generation beyond third cousin.
Both men and women can take advantage of this sale. However, women can only take the Family Finder + mtDNA option as women do not have Y-chromosome DNA. The Y-DNA 12 and the mtDNA tests bundled with Family Finder for this sale are entry level tests. They will give a vague indication of deep ancestry but matches at this level will not be useful for identifying specific relatives in the database. On the other hand, they can definitely eliminate many potential relatives who belong to different ancient tribes than the person being tested. While the Family Finder test is as definitive as any autosomal test on the market, the two tests with which it is bundled for this sale should be considered as entry level only. Those taking advantage of the sale price for genealogical purposes, will probably want to expand the Y-chromosome or the mitochondrial portions at a later date--possibly at the next sale aimed at existing customers.
Dear Family Tree DNA Project
Administrator,
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This is a courtesy
e-mail to you about a promotion that we have announced to all our customers,
and therefore you don't need to re-post it in your administrators' bulk
e-mail system.
It seems that every
time we run a super sale
that a few people email us days later that they were traveling, sick or just
hadn't looked at their emails in time, so for all of you who have wanted to
entice a friend, neighbor or reluctant relative to get involved in Genetic
Genealogy here's one more opportunity, but it will
last for only 72 hours.
These are the only two
options on sale, and they are geared specifically for newcomers. This sale
will end on Saturday, August 25, at 11:59PM.
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As with all promotions,
orders need to be placed by the end of the sale and payment must be made by
end of this sale. Learn More
|
Labels:
Autosomal DNA,
Family Finder,
Family Tree DNA,
FTDNA Sale
Tuesday, August 21, 2012
Where Did My Genes Come From?
DNA can be mind numbingly precise; but there is so much more that we have yet to learn. One example of this is our attempts to determine our geographic and ethnic origins. The chart below gives the current such projections for Dr D:
If you can read the chart above, Ancestry projects that 71% of my DNA is compatible with origin in the British Isles and 25% appears to be of Eastern European origin--leaving 4% uncertain. 23andMe tells me that I am more than 99% European, less than 1% Asian and 0% African. Family Tree DNA (FTDNA) reports that 94.36% plus or minus 1.72% of my DNA is compatible with Western European origin; and 5.64% (again plus or minus 1.72%) is of Middle Eastern origin.
Hmm? I'm glad I got that all sorted out. What else did these lab reports tell me? 23andMe specified that the Asian component (less than 1%) is on Chromosome 1. FTDNA equates my Western European overwhelming majority as being compatible with Orcadian (Orkney Islands?) DNA. The remaining Middle East component is classified as "Palestinian, Adygei, Bedouin, Bedouin South, Druze, Iranian, Jewish, Mozabite."
This all must have been confused by my 2.5% Neanderthal DNA which 23andMe found. As a point of reference, this put me at the 39th percentile of Northern Europeans who are said to average 2.6%. My wife and her sister scored at the 95 percentile with 3% Neanderthal DNA. I want a recount! It looks like I may get it with Gene 2.0 which claims to test Neanderthal as well as Denisovan DNA.
So what have I learned as a result of these analyses? I have learned to take these reports, at their current state of evolution, with a grain (or perhaps a shaker) of salt. They point in the right direction but the exact point of origin of my various deep ancestors are still a little murky. These predictions are based on autosomal DNA so it encompasses all my lines and not just the paternal > paternal... (Y-chromosome) and the maternal > maternal... (mitochondrial) lines. I hope more experience and more individuals testing will sharpen the focus of these emotionally fascinating tests.
Thursday, August 16, 2012
Autosomal Testing of Multiple Family Members
We all know that autosomal DNA is inherited is rather random
way. Although each parent contributes essentially half of a child’s DNA, it is
hard to predict how much of that half comes from each grandparent. We are all
still learning how best to understand the test results.
Testing the autosomal DNA of multiple family members can
have several advantages. One of the more obvious is that test results for a
paternal or maternal relative can greatly reduce the part of your family tree you
need to search when a match from an unplaced relative is made. Since I do not
have the option of testing my parents I have used a paternal first cousin and a
maternal first cousin – once removed as surrogates. I made a small experiment to see how helpful the
autosomes of my cousins might be. I also compared the test results of my son
and daughter with those of my 57 projected “distant relatives” who were
predicted to be my 3rd or 4th cousins by FTDNA. The table
below shows my preliminary findings:
Family Finder "Distant Relatives"
Predicted 3rd
or 4th Cousins
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|||||
"Distant Relatives"
|
Me
|
1st Cousin
(father’s side)
|
1st Cousin -- 1 removed
(mother’s side)
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Daughter
|
Son
|
Total
|
56
|
38
|
47
|
43
|
47
|
My closest
"Distant" matches
|
No other match
|
My matches that also matched one of
these close relatives
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|||
1-10
|
0
|
2
|
1
|
6
|
2
|
11-20
|
2
|
0
|
2
|
5
|
5
|
21-30
|
1
|
3
|
1
|
5
|
3
|
31-40
|
4
|
2
|
0
|
5
|
2
|
41-50
|
8
|
0
|
1
|
0
|
1
|
51-57
|
2
|
0
|
0
|
1
|
3
|
Total
|
17
|
7
|
5
|
22
|
16
|
As you see 7 of my 57 “distant relative” matches were shared
by my paternal first cousin. Also 5 of my 57 matches were shared with my
maternal first cousin – once removed. As I had expected none of these 12 matches
overlap. So it appears that a match with one or the other of these two cousins
should narrow my search for our common ancestry to one side of my family.
Other findings were not as predictable. Twenty-two of my “distant
relatives” were shared with my daughter and 16 with my son. Of those 5 of their
matches overlapped and they had 28 unique matches between them.
My children share one of their 5 common matches with each of
my two cousins. In addition, each child independently shares one separate match
with each of my cousins. Actually, my son shares two with my first cousin –
once removed that are not shared with his sister.
Of my 57 matches the 14 strongest matches are shared with at
least one offspring or cousin and 23 of the strongest 25 are so shared. Only 11
of the next 25 are so shared. Four of the weakest 7 matches are shared. It is
possible that some of the 19 unshared (with close family members) actually
would show up as “remote matches.” I may extend my little analysis to see if
this is true. If I do I’ll add the results to the blog at that time.
Also of possible interest is to explore further the extent
to which full siblings share matches with distant and remote relatives.
Sunday, August 5, 2012
1940 US Census Completely Indexed @ Ancestry.com
All 132 million individuals enumerated in the 1940 US Census images are now indexed and searchable by name at Ancestry.com. Congratulations to Ancestry. This monumental feat was accomplished in half the time I had expected it to take. Even if you do not have a paid Ancestry subscription, you may search these records free of charge -- at least until the end of 2013. Enjoy and learn about your family.
In addition to the all-name index, Ancestry has greatly improved the our viewing experience. A few of these enhancements are described below:
1. The names on the sheet are "typed out" as the indexer deciphered them. (see above arrow) |
2. Abbreviated headings for each column are anchored and do not scroll out of sight. (see to right of arrow) |
At this writing the consortium headed by FamilySearch has completed the indexing for about two-thirds of the states and territories and is nearing completing of many of the remaining areas. This project promises to provide free access perpetually.
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